Muhammad was taken to captivity in Karabakh and killed in 1785 during the revolt of Ganja against the foreign rule led by Muhammad's relative Hajji Beg.
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Together with Hajji Beg, the leader of the Barlas tribe, they overthrew ‘Abdullah and killed his puppet khan.
As predicted, most of the tribal amirs declared their support for him; those that didn't (notably Hajji Beg of the Barlas tribe) decided to flee.