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Emperor tamarins are located in protected areas in Peru at Manú National Park and Bolivia at Manuripi-Heath Amazonian Wildlife National Reserve.
It is generally fairly common throughout its range and is easily seen in a wide range of protected areas, such as the Manú National Park and Tambopata-Candamo in Peru, Cristalino State Park (near Alta Floresta), Xingu National Park and Amazônia National Park in Brazil, and Madidi National Park in Bolivia.