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In the early 1990s, during the Tajik Civil War, it was very dangerous, if not fatal, for Pamiri people to go to universities and other educational institutions in Dushanbe or other southern cities of Tajikistan, as they were frequently targeted by rival groups.
Ayombekov had been a warlord during the 1992 to 1997 Tajik Civil War between the United Tajik Opposition and the government led by President Rahmon Nabiyev.