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During the Iraq War, he served as the Economics Officer in the Office of Joint Strategic Planning & Assessment (JSPA) at the United States Embassy in Baghdad, helping the Iraqi government as part of the Baghdad Security Plan, receiving accolades from then General David Petraeus as well as Ambassador Ryan Crocker,.
During the second term, Cooper served several diplomatic postings including United States Embassy in Baghdad, where as an advisor to Ambassador Zalmay Khalilzad, often travelled with members of Congress in the Middle East region.