The following summer, he moved to fellow league team FC Bayern Munich where, save for one year, he was always crowned the club's top scorer (Carsten Jancker prevented that honour); additionally, he was instrumental in the conquest of four leagues, the 2000–01 UEFA Champions League and the 2001 Intercontinental Cup, whilst winning the Torjäger award for 2002–03 – 21 goals, the Bavarians won the double.
Palma il Giovane | Giovane Gávio | Giovane Élber | Barocco sempre giovane |
;Bundesliga top goal scorer: 1985–86 (Stefan Kuntz, 22 goals), 2002–03 (Thomas Christiansen, 21 goals (w/Giovane Élber)), 2006–07 (Theofanis Gekas, 20 goals)