The Archives is currently headquartered in the National Library of the Philippines and maintains offices and facilities in Paco, Manila, Cebu, and Davao.
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Notably, the Archives does not keep a large portion of the Katipunan records, including the Philippine Declaration of Independence, which are currently kept by the National Library of the Philippines in its Philippine Insurgency Records collection.
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In 2004, then Director Ricardo Manapat was accused of forging documents to support a disqualification case against Presidential candidate Fernando Poe, Jr.
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