She died in 1593 and received the honour of burial at the Gaunt's Chapel, Bristol.
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The couple's eldest son was Sir Richard Berkeley (died 1604), MP for Gloucestershire, whose effigy can be seen in The Gaunts Chapel, Bristol.
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Eleanor was also the grandmother of Sir Ferdinando Gorges, founder of the American province of Maine, whose mother was Cicely Lygon.
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The first of the Denys family to have resided at Dyrham rather than at the Denys ancestral manor of Siston, appears to have been Sir William Denys(1470–1533), son of Sir Walter Denys(d.1505), who is depicted on the Denys monumental brass in the Church of Olveston, which manor was also held by the family, and Agnes Danvers.