For the remainder of the war, the 1st California Infantry was engaged in garrison duty dispersed in posts across New Mexico Territory and Texas and fighting Apache and Navajo Indians in these places and in the Utah Territory.
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It was not until late June that a scout named John W. Jones was able to outrun pursuing Apaches and get a message to Canby: "The Column from California is really coming." On the march to the Rio Grande, 140 men of Company E, 1st California Infantry, and Company B, 2nd California Infantry, fought the famous Apache leader Cochise at Apache Pass in July.