After retiring as a player, Cowie was active as a coach in Oceania, where he served as manager of the Papua New Guinea national under-23 team and the Solomon Islands national team.
He moved to Mondovi in Buffalo County in 1878, and was elected a fourth time to the Assembly in 1884 for Buffalo County as a Republican, with 1,604 votes to 1,177 for Democratic former Assemblyman George Cowie.
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