The various sources include the scientific literature, books, government documents, and numerous external databases (such as PubChem, UniProt, PubMed, DrugBank, Human Metabolome Database (HMDB), NIST Chemistry WebBook, KEGG, NCI Database Browser, PharmGKB, Food and Drug Administration, ChEBI, and ChemExper).
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T3DB is part of a suite of metabolomics databases that also includes HMDB, DrugBank, and The Small Molecule Pathway Database (SMPDB).