In his role as a high ranking official in the Ministry of Defense he was closely involved in all aspects of not only the Herceg-Bosna/HVO military planning and operations but the actions of the Herceg-Bosna/HVO civilian police too.
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In his indictment it is alleged that Praljak as a senior military official commanded directly and indirectly the Herceg-Bosna/HVO armed forces which committed mass war crimes against Bosnian Muslim population in around 30 municipalities in Bosnian and Herzegovina.
Slobodan Milošević | Slobodan Milosevic | Slobodan Šijan | Slobodan Pajic | Slobodan Peladić | Slobodan Medojević | Trial of Slobodan Milošević | trial of Slobodan Milošević | Slobodan Soro | Slobodan Samardžić | Slobodan Praljak | Slobodan Pejić | Slobodan "Loka" Nešović | Slobodan Kačar | Slobodan Janković (footballer born 1986) | Slobodan Janjić |
In November 1993 Naletilić was in conflict with general of HVO, Slobodan Praljak, who was later forced to leave the post of Chief of Staff of HVO because of that.