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These organizations eventually became The Scripps Research Institute, and two of the core providers now comprising Scripps Health—Scripps Memorial Hospital La Jolla and Scripps Clinic.
He fostered relationships with organizations such as The Scripps Research Institute, the Torrey Pines Institute for Molecular Studies, the Max Planck Society and the H. Lee Moffitt Cancer Center & Research Institute.
Among the several research institutes near UCSD and in the nearby Torrey Pines Science Park are The Scripps Research Institute, the Sanford-Burnham Medical Research Institute (formerly called the La Jolla Cancer Research Foundation), La Jolla Institute for Allergy and Immunology (LIAI) and the Salk Institute.
In the 1990s, Stephen Kent and coworkers at The Scripps Research Institute independently developed "Native Chemical Ligation", the first practical method to ligate large unprotected peptide fragments.
The invention of antibody phage display by laboratories at the MRC Laboratory of Molecular Biology led by Greg Winter and John McCafferty, The Scripps Research Institute led by Richard Lerner and Carlos F. Barbas and the German Cancer Research Centre by Frank Breitling and Stefan Dübel revolutionised antibody drug discovery.