X-Nico

3 unusual facts about FASTA format


Clustal

This program accepts a wide range of input formats, including NBRF/PIR, FASTA, EMBL/Swiss-Prot, Clustal, GCC/MSF, GCG9 RSF, and GDE.

FASTA

The FASTA file format used as input for this software is now largely used by other sequence database search tools (such as BLAST) and sequence alignment programs (Clustal, T-Coffee, etc.).

Warren Gish

to allow users to retrieve individual sequences in part or in whole, natively, translated or reverse-complemented, and able to dump the entire contents of a BLAST database back into human-readable FASTA format.


FASTQ format

It was originally developed at the Wellcome Trust Sanger Institute to bundle a FASTA sequence and its quality data, but has recently become the de facto standard for storing the output of high throughput sequencing instruments such as the Illumina Genome Analyzer.


see also