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Bald Eagles, Golden Eagles, Prairie Falcons, Peregrine Falcons, Northern Harriers, American Kestrels, Great Horned Owls, Barn Owls, Ospreys and Red-Tailed Hawks are some of the species of raptors that can occur on the island.
The area has a very diverse ecosystem that supports Lake Trout, Lake Whitefish, Cisco, Arctic Grayling, Walleye & Yellow Perch; Osprey & Bald Eagles and many more.
The fauna found in abundance in the lake area, as one approaches along the Luktak Channel and the outlet stream from the lake, are Bald eagles, harbor seals, bears feeding on salmon and mountain goats on the hill slopes.
CWF assists in managing New Jersey's population of bald eagles.
Dwight Dion Sr., a member of the Yankton Sioux Tribe of South Dakota, was convicted of shooting four bald eagles in violation of the Endangered Species Act, and of selling the carcasses in violation of the Eagle Protection Act and Migratory Bird Treaty Act.
Messalonskee Lake is home to a great variety of wildlife, including great blue herons, bass, yellow perch, white perch, sunfish, painted and snapping turtles, loons, and now the lake has recently have Bald Eagles come to the lake.