In the 2005–06 campaign, following the decision of Dutch coach Co Adriaanse not wanting a goalkeeper captain (Vítor Baía) and sidelining Jorge Costa, Emanuel was chosen as the side's new captain.
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In the season following the departure of Mourinho, Emanuel still managed to appear in the spotlight, as in the 2004 Intercontinental Cup win against Once Caldas, where he scored the decisive penalty, becoming the last player to touch the ball in the competition's history.
San Pedro Sula | San Pedro | Pedro Almodóvar | Rahm Emanuel | Emanuel Lasker | San Pedro de Macorís | Pedro Infante | Pedro II of Brazil | Pedro Martínez | Pedro Vargas | San Pedro, Los Angeles | Pedro Rosselló | Emanuel Swedenborg | Emanuel Leutze | San Pedro Town | Maximilian II Emanuel, Elector of Bavaria | Emanuel Ungaro | Emanuel Ax | Colégio Pedro II | Pedro Rodríguez | Pedro Fernández de Castro | Pedro Damián | Pedro Álvares Cabral | San Pedro de Atacama | Point Pedro | Pedro Juan Caballero, Paraguay | Pedro Juan Caballero | Pedro Cieza de León | Pedro Bell | Emanuel Schegloff |
Barros' squad selection saw him leave out Bruno Moraes, João Paulo, Lucho González, Pedro Emanuel and Tomo Šokota who were unavailable for the game to due to injury.