Van Dixhoorn has lectured at RTS (Reformed Theological Seminary) DC since 2008, where he teaches church history and practical theology.
In April 2010, Bruce Waltke offered to resign his professorship at Reformed Theological Seminary because of controversy over a video where he discussed his positive views on evolution.
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He has been the Adjunct Professor at Western Seminary and Guest Professor at the Reformed Theological Seminary in Orlando, Florida and McLean, Virginia, as well as lecturing in many other theological institutions.
Faculty members hold positions at such schools as the University of Notre Dame, Duke Divinity School, Wheaton College (Illinois), the Candler School of Theology at Emory University, Northwestern College, College of the Ozarks, Indiana Wesleyan University, the Perkins School of Theology at Southern Methodist University, Reformed Theological Seminary, and Northern Seminary.
But under the influence of Neander he was gradually breaking away from "Puritanic Presbyterianism," and in 1840, having resigned his chair in Allegheny, he was appointed professor of theology in the (German Reformed) Theological Seminary at Mercersburg, Pa., and thus passed from the Presbyterian Church into the German Reformed.
In 1843, he was called to become Professor of Church History and Biblical Literature in the German Reformed Theological Seminary of Mercersburg, Pennsylvania, then the only seminary of that church in America.